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Transitioning from Google Life Sciences API to Batch

Posted on 09-06-2023 12:16 PM
mbabins
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Reply posted on --/--/---- --:-- AM

Hey, 

Recently set up cromwell on GCP for omic processing workflows following this architecture:

mbabins_0-1694027519702.png

The architecture leverages the Google Life Sciences API which is going to be deprecated as of July, 2025. 

Was wondering if anyone has any suggestions / resources of moving from this architecture to using GCP Batch for large scale data processing with cromwell and WDL. Thanks!

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Posted on --/--/---- --:-- AM
lsolatorio
Staff
Reply posted on --/--/---- --:-- AM

Hi @mbabins, 

Welcome and we appreciate you reaching out to our community for help.

I understand that you wanted to learn more about Batch as your next data processing tool and thank you for reading through our Genomic data processing using Cromwell document.

Let me provide you with some usable resources for this transition.

Hope this helps.

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